PoplarV1, Main, Exploration, bibRecord, 000941

Genome-Wide Analysis of Multiple Organellar RNA Editing Factor Family in Poplar Reveals Evolution and Roles in Drought Stress.

Identifieur interne : 000941 ( Main/Exploration ); précédent : 000940; suivant : 000942

Genome-Wide Analysis of Multiple Organellar RNA Editing Factor Family in Poplar Reveals Evolution and Roles in Drought Stress.

Auteurs : Dongli Wang [République populaire de Chine] ; Sen Meng [République populaire de Chine] ; Wanlong Su [République populaire de Chine] ; Yu Bao [République populaire de Chine] ; Yingying Lu [République populaire de Chine] ; Weilun Yin [République populaire de Chine] ; Chao Liu [République populaire de Chine] ; Xinli Xia [République populaire de Chine]

Source :

International journal of molecular sciences [ 1422-0067 ] ; 2019.

RBID : pubmed:30901839

Descripteurs français

English descriptors

KwdEn :
- Amino Acid Sequence (MeSH), Chromosomes, Plant (MeSH), Droughts (MeSH), Evolution, Molecular (MeSH), Gene Expression Profiling (MeSH), Gene Expression Regulation, Plant (MeSH), Genes, Chloroplast (MeSH), Genes, Mitochondrial (MeSH), Genome-Wide Association Study (MeSH), Multigene Family (MeSH), Phylogeny (MeSH), Plant Proteins (chemistry), Plant Proteins (genetics), Plant Proteins (metabolism), Populus (genetics), Populus (metabolism), RNA Editing (MeSH), Sequence Analysis, DNA (MeSH), Stress, Physiological (MeSH), Synteny (MeSH).
MESH :
- chemical , chemistry : Plant Proteins.
- chemical , genetics : Plant Proteins.
- chemical , metabolism : Plant Proteins.
- genetics : Populus.
- metabolism : Populus.
- Amino Acid Sequence, Chromosomes, Plant, Droughts, Evolution, Molecular, Gene Expression Profiling, Gene Expression Regulation, Plant, Genes, Chloroplast, Genes, Mitochondrial, Genome-Wide Association Study, Multigene Family, Phylogeny, RNA Editing, Sequence Analysis, DNA, Stress, Physiological, Synteny.

Abstract

Poplar (Populus) is one of the most important woody plants worldwide. Drought, a primary abiotic stress, seriously affects poplar growth and development. Multiple organellar RNA editing factor (MORF) genes-pivotal factors in the RNA editosome in Arabidopsis thaliana-are indispensable for the regulation of various physiological processes, including organelle C-to-U RNA editing and plasmid development, as well as in the response to stresses. Although the poplar genome sequence has been released, little is known about MORF genes in poplar, especially those involved in the response to drought stress at the genome-wide level. In this study, we identified nine MORF genes in the Populus genome. Based on the structural features of MORF proteins and the topology of the phylogenetic tree, the P. trichocarpa (Ptr) MORF family members were classified into six groups (Groups I⁻VI). A microsynteny analysis indicated that two (22.2%) PtrMORF genes were tandemly duplicated and seven genes (77.8%) were segmentally duplicated. Based on the d_N/d_S ratios, purifying selection likely played a major role in the evolution of this family and contributed to functional divergence among PtrMORF genes. Moreover, analysis of qRT-PCR data revealed that PtrMORFs exhibited tissue- and treatment-specific expression patterns. PtrMORF genes in all group were involved in the stress response. These results provide a solid foundation for further analyses of the functions and molecular evolution of MORF genes in poplar, and, in particular, for improving the drought resistance of poplar by genetics manipulation.

DOI: 10.3390/ijms20061425
PubMed: 30901839
PubMed Central: PMC6471648

Affiliations:

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Le document en format XML

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<profileDesc><textClass><keywords scheme="KwdEn" xml:lang="en"><term>Amino Acid Sequence (MeSH)</term>
<term>Chromosomes, Plant (MeSH)</term>
<term>Droughts (MeSH)</term>
<term>Evolution, Molecular (MeSH)</term>
<term>Gene Expression Profiling (MeSH)</term>
<term>Gene Expression Regulation, Plant (MeSH)</term>
<term>Genes, Chloroplast (MeSH)</term>
<term>Genes, Mitochondrial (MeSH)</term>
<term>Genome-Wide Association Study (MeSH)</term>
<term>Multigene Family (MeSH)</term>
<term>Phylogeny (MeSH)</term>
<term>Plant Proteins (chemistry)</term>
<term>Plant Proteins (genetics)</term>
<term>Plant Proteins (metabolism)</term>
<term>Populus (genetics)</term>
<term>Populus (metabolism)</term>
<term>RNA Editing (MeSH)</term>
<term>Sequence Analysis, DNA (MeSH)</term>
<term>Stress, Physiological (MeSH)</term>
<term>Synteny (MeSH)</term>
</keywords>
<keywords scheme="KwdFr" xml:lang="fr"><term>Analyse de profil d'expression de gènes (MeSH)</term>
<term>Analyse de séquence d'ADN (MeSH)</term>
<term>Chromosomes de plante (MeSH)</term>
<term>Famille multigénique (MeSH)</term>
<term>Gènes chloroplastiques (MeSH)</term>
<term>Gènes de mitochondrie (MeSH)</term>
<term>Phylogenèse (MeSH)</term>
<term>Populus (génétique)</term>
<term>Populus (métabolisme)</term>
<term>Protéines végétales (composition chimique)</term>
<term>Protéines végétales (génétique)</term>
<term>Protéines végétales (métabolisme)</term>
<term>Régulation de l'expression des gènes végétaux (MeSH)</term>
<term>Stress physiologique (MeSH)</term>
<term>Synténie (MeSH)</term>
<term>Sécheresses (MeSH)</term>
<term>Séquence d'acides aminés (MeSH)</term>
<term>Édition des ARN (MeSH)</term>
<term>Étude d'association pangénomique (MeSH)</term>
<term>Évolution moléculaire (MeSH)</term>
</keywords>
<keywords scheme="MESH" type="chemical" qualifier="chemistry" xml:lang="en"><term>Plant Proteins</term>
</keywords>
<keywords scheme="MESH" type="chemical" qualifier="genetics" xml:lang="en"><term>Plant Proteins</term>
</keywords>
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</keywords>
<keywords scheme="MESH" qualifier="composition chimique" xml:lang="fr"><term>Protéines végétales</term>
</keywords>
<keywords scheme="MESH" qualifier="genetics" xml:lang="en"><term>Populus</term>
</keywords>
<keywords scheme="MESH" qualifier="génétique" xml:lang="fr"><term>Populus</term>
<term>Protéines végétales</term>
</keywords>
<keywords scheme="MESH" qualifier="metabolism" xml:lang="en"><term>Populus</term>
</keywords>
<keywords scheme="MESH" qualifier="métabolisme" xml:lang="fr"><term>Populus</term>
<term>Protéines végétales</term>
</keywords>
<keywords scheme="MESH" xml:lang="en"><term>Amino Acid Sequence</term>
<term>Chromosomes, Plant</term>
<term>Droughts</term>
<term>Evolution, Molecular</term>
<term>Gene Expression Profiling</term>
<term>Gene Expression Regulation, Plant</term>
<term>Genes, Chloroplast</term>
<term>Genes, Mitochondrial</term>
<term>Genome-Wide Association Study</term>
<term>Multigene Family</term>
<term>Phylogeny</term>
<term>RNA Editing</term>
<term>Sequence Analysis, DNA</term>
<term>Stress, Physiological</term>
<term>Synteny</term>
</keywords>
<keywords scheme="MESH" xml:lang="fr"><term>Analyse de profil d'expression de gènes</term>
<term>Analyse de séquence d'ADN</term>
<term>Chromosomes de plante</term>
<term>Famille multigénique</term>
<term>Gènes chloroplastiques</term>
<term>Gènes de mitochondrie</term>
<term>Phylogenèse</term>
<term>Régulation de l'expression des gènes végétaux</term>
<term>Stress physiologique</term>
<term>Synténie</term>
<term>Sécheresses</term>
<term>Séquence d'acides aminés</term>
<term>Édition des ARN</term>
<term>Étude d'association pangénomique</term>
<term>Évolution moléculaire</term>
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<front><div type="abstract" xml:lang="en">Poplar (Populus) is one of the most important woody plants worldwide. Drought, a primary abiotic stress, seriously affects poplar growth and development. Multiple organellar RNA editing factor (<i>MORF</i>
) genes-pivotal factors in the RNA editosome in <i>Arabidopsis thaliana</i>
-are indispensable for the regulation of various physiological processes, including organelle C-to-U RNA editing and plasmid development, as well as in the response to stresses. Although the poplar genome sequence has been released, little is known about <i>MORF</i>
 genes in poplar, especially those involved in the response to drought stress at the genome-wide level. In this study, we identified nine <i>MORF</i>
 genes in the Populus genome. Based on the structural features of MORF proteins and the topology of the phylogenetic tree, the <i>P. trichocarpa</i>
 (Ptr) MORF family members were classified into six groups (Groups I⁻VI). A microsynteny analysis indicated that two (22.2%) <i>PtrMORF</i>
 genes were tandemly duplicated and seven genes (77.8%) were segmentally duplicated. Based on the <i>d<sub>N</sub>
/d<sub>S</sub>
</i>
 ratios, purifying selection likely played a major role in the evolution of this family and contributed to functional divergence among <i>PtrMORF</i>
 genes. Moreover, analysis of qRT-PCR data revealed that <i>PtrMORFs</i>
 exhibited tissue- and treatment-specific expression patterns. <i>PtrMORF</i>
 genes in all group were involved in the stress response. These results provide a solid foundation for further analyses of the functions and molecular evolution of <i>MORF</i>
 genes in poplar, and, in particular, for improving the drought resistance of poplar by genetics manipulation.</div>
</front>
</TEI>
<pubmed><MedlineCitation Status="MEDLINE" Owner="NLM"><PMID Version="1">30901839</PMID>
<DateCompleted><Year>2019</Year>
<Month>07</Month>
<Day>16</Day>
</DateCompleted>
<DateRevised><Year>2020</Year>
<Month>02</Month>
<Day>25</Day>
</DateRevised>
<Article PubModel="Electronic"><Journal><ISSN IssnType="Electronic">1422-0067</ISSN>
<JournalIssue CitedMedium="Internet"><Volume>20</Volume>
<Issue>6</Issue>
<PubDate><Year>2019</Year>
<Month>Mar</Month>
<Day>21</Day>
</PubDate>
</JournalIssue>
<Title>International journal of molecular sciences</Title>
<ISOAbbreviation>Int J Mol Sci</ISOAbbreviation>
</Journal>
<ArticleTitle>Genome-Wide Analysis of Multiple Organellar RNA Editing Factor Family in Poplar Reveals Evolution and Roles in Drought Stress.</ArticleTitle>
<ELocationID EIdType="pii" ValidYN="Y">E1425</ELocationID>
<ELocationID EIdType="doi" ValidYN="Y">10.3390/ijms20061425</ELocationID>
<Abstract><AbstractText>Poplar (Populus) is one of the most important woody plants worldwide. Drought, a primary abiotic stress, seriously affects poplar growth and development. Multiple organellar RNA editing factor (<i>MORF</i>
) genes-pivotal factors in the RNA editosome in <i>Arabidopsis thaliana</i>
-are indispensable for the regulation of various physiological processes, including organelle C-to-U RNA editing and plasmid development, as well as in the response to stresses. Although the poplar genome sequence has been released, little is known about <i>MORF</i>
 genes in poplar, especially those involved in the response to drought stress at the genome-wide level. In this study, we identified nine <i>MORF</i>
 genes in the Populus genome. Based on the structural features of MORF proteins and the topology of the phylogenetic tree, the <i>P. trichocarpa</i>
 (Ptr) MORF family members were classified into six groups (Groups I⁻VI). A microsynteny analysis indicated that two (22.2%) <i>PtrMORF</i>
 genes were tandemly duplicated and seven genes (77.8%) were segmentally duplicated. Based on the <i>d<sub>N</sub>
/d<sub>S</sub>
</i>
 ratios, purifying selection likely played a major role in the evolution of this family and contributed to functional divergence among <i>PtrMORF</i>
 genes. Moreover, analysis of qRT-PCR data revealed that <i>PtrMORFs</i>
 exhibited tissue- and treatment-specific expression patterns. <i>PtrMORF</i>
 genes in all group were involved in the stress response. These results provide a solid foundation for further analyses of the functions and molecular evolution of <i>MORF</i>
 genes in poplar, and, in particular, for improving the drought resistance of poplar by genetics manipulation.</AbstractText>
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<ForeName>Dongli</ForeName>
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Genome-Wide Analysis of Multiple Organellar RNA Editing Factor Family in Poplar Reveals Evolution and Roles in Drought Stress.

Genome-Wide Analysis of Multiple Organellar RNA Editing Factor Family in Poplar Reveals Evolution and Roles in Drought Stress.

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